cls.DefaultTable.CVcfTableWriter Class Reference

Implements writing of VCF files. More...

Inheritance diagram for cls.DefaultTable.CVcfTableWriter:

Collaboration diagram for cls.DefaultTable.CVcfTableWriter:

Public Member Functions
def	writerow (s, data)
	See csv.writer.writerow. More...
def	writerows (s, data)
	See csv.writer.writerows. More...
def	writeComments (s, vcfReader)
	Write the comment lines previously read with a VCF reader. More...
def	GetWriter (s)
Public Member Functions inherited from cls.DefaultTable.CDefaultTableWriter
def	__init__ (s, ffn, mode="wb")
Public Member Functions inherited from cls.DefaultTable.CDefaultTableBase
def	__init__ (s, ffn)
	Ctor. More...
def	IsValid (s)
	Check if the object is ready for reading/writing. More...
def	Close (s)
	Close the file object associated with the file name. More...

Additional Inherited Members
Static Public Attributes inherited from cls.DefaultTable.CDefaultTableBase
	COL_SEP = CSV_SEP;
	QUOTING = csv.QUOTE_NONE;
string	ESCAPE_CHAR = "\\";

Detailed Description

Implements writing of VCF files.

Member Function Documentation

GetWriter()

def cls.DefaultTable.CVcfTableWriter.GetWriter

(

s

)

     @return @c csv.writer instance for more sophisticated operations.

Reimplemented from cls.DefaultTable.CDefaultTableWriter.

writeComments()

def cls.DefaultTable.CVcfTableWriter.writeComments	(		s,
			vcfReader
	)

Write the comment lines previously read with a VCF reader.

    @param vcfReader  A cls.DefaultTable.CVcfTableReader instance holding
    the comments for output here.

writerow()

def cls.DefaultTable.CVcfTableWriter.writerow	(		s,
			data
	)

See csv.writer.writerow.

Reimplemented from cls.DefaultTable.CDefaultTableWriter.

writerows()

def cls.DefaultTable.CVcfTableWriter.writerows	(		s,
			data
	)

See csv.writer.writerows.

Reimplemented from cls.DefaultTable.CDefaultTableWriter.

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The documentation for this class was generated from the following file:

• cls/DefaultTable.py