cls.HSEnsgProteinMapping Namespace Reference

Provide Ensembl gene ID to Ensembl protein ID mapping. More...

Classes
class	CHSEnsgProteinMapping
	Ensembl gene centered protein mapping. More...

Variables
string	ENSEMBL_PROTEIN_DB = "hsprot-0";
	Ensembl protein database. More...
string	ENSEMBL_TRANSCRIPT_DB = "hsprot-1";
	Ensembl transcripts. More...
string	UNIPROT_SWISSPROT_DB = "hsprot-2";
	Uniprot, manually curated protein annotation (stable accession numbers) More...
string	UNIPROT_TREMBL_DB = "hsprot-3";
	Uniprot, 'electronically' annotated protein sequences (stable accessions). More...
string	UNIPROT_SWISSPROT_ENTRYNAME_DB = "hsprot-4";
	Uniprot, entry IDs for SwissProt entries only. More...
string	UNIPROT_TREMBL_ENTRYNAME_DB = "hsprot-5";
	Uniprot, entry IDs for TrEmbl entries only. More...
string	ENSEMBL_CCDS_DB = "hsprot-6";
	NCBI Consensus CoDing Sequence (CCDS) data base. More...

Detailed Description

Provide Ensembl gene ID to Ensembl protein ID mapping.

Author

Chris X. Weichenberger

Date

2012-03-06

Copyright

See LICENSE file.

Variable Documentation

ENSEMBL_CCDS_DB

string cls.HSEnsgProteinMapping.ENSEMBL_CCDS_DB = "hsprot-6";

NCBI Consensus CoDing Sequence (CCDS) data base.

ENSEMBL_PROTEIN_DB

string cls.HSEnsgProteinMapping.ENSEMBL_PROTEIN_DB = "hsprot-0";

Ensembl protein database.

ENSEMBL_TRANSCRIPT_DB

string cls.HSEnsgProteinMapping.ENSEMBL_TRANSCRIPT_DB = "hsprot-1";

Ensembl transcripts.

UNIPROT_SWISSPROT_DB

string cls.HSEnsgProteinMapping.UNIPROT_SWISSPROT_DB = "hsprot-2";

Uniprot, manually curated protein annotation (stable accession numbers)

UNIPROT_SWISSPROT_ENTRYNAME_DB

string cls.HSEnsgProteinMapping.UNIPROT_SWISSPROT_ENTRYNAME_DB = "hsprot-4";

Uniprot, entry IDs for SwissProt entries only.

UNIPROT_TREMBL_DB

string cls.HSEnsgProteinMapping.UNIPROT_TREMBL_DB = "hsprot-3";

Uniprot, 'electronically' annotated protein sequences (stable accessions).

UNIPROT_TREMBL_ENTRYNAME_DB

string cls.HSEnsgProteinMapping.UNIPROT_TREMBL_ENTRYNAME_DB = "hsprot-5";

Uniprot, entry IDs for TrEmbl entries only.