cls.GODBAccess Namespace Reference

Class for accessing Gene Ontology data. More...

Classes
class	CGODBAccess

Variables
list	GO_RELATIONSHIP_TYPES
list	DB_AUTHORITIES

Detailed Description

Class for accessing Gene Ontology data.

Data is stored in the official MySQL schema (http://www.geneontology.org/GO.downloads.shtml).

Authors

Hagen Blankenburg

Date

2013-10-12

Copyright

See LICENSE file.

Variable Documentation

DB_AUTHORITIES

list cls.GODBAccess.DB_AUTHORITIES

Initial value:

=  ["'UniProtKB'", "'UniProtKB/Swiss-Prot'", "'FB'", "'MGI'",
                    "'RGD'", "'PomBase'", "'TAIR'", "'ZFIN'", "'SGN'"]

GO_RELATIONSHIP_TYPES

list cls.GODBAccess.GO_RELATIONSHIP_TYPES

Initial value:

=  ["is_a", "part_of", "regulates",
                         "positively_regulates", "negatively_regulates"]