Represents a dictionary. More...

Inheritance diagram for cls.PharmaADMEntoring.CPharmaADMEntoring:

Collaboration diagram for cls.PharmaADMEntoring.CPharmaADMEntoring:

Public Member Functions
def	__init__ (s, paths)
	Constructor. More...

def	FindByVariantObject (s, varObj)
	Find a matching PharmaADME variant. More...

def	FindByVariantText (s, gc, ref, alt, strand="+")
	See FindByVariantObject. More...

Static Public Attributes
	pth = CPaths(defDataVer="v-01");

	obj = CPharmaADMEntoring(pth);

Detailed Description

Represents a dictionary.

Keys are PharmaADME marker names, values are cls.Variant.CAlleleVariant
objects.

Constructor & Destructor Documentation

◆ init()

def cls.PharmaADMEntoring.CPharmaADMEntoring.__init__	(	s,
		paths
	)

Constructor.

Parameters

paths CPaths object.

Member Function Documentation

◆ FindByVariantObject()

def cls.PharmaADMEntoring.CPharmaADMEntoring.FindByVariantObject	(	s,
		varObj
	)

Find a matching PharmaADME variant.

    Searches the list of PharmaADME core markers for matching variations
    on both the forward and reverse strand requiring strict strandedness.
    Therefore, if it is not known if the variant is on the forward or on
    the reverse strand, it must be called twice, once for each strand.
    @param varObj  A cls.Variant.CAlleleVariant instance.
    @result The PharmaADME ID, which is the key to the variant of this
    dictionary. Empty String if not found.

◆ FindByVariantText()

def cls.PharmaADMEntoring.CPharmaADMEntoring.FindByVariantText	(	s,
		gc,
		ref,
		alt,
		strand = `"+"`
	)

See FindByVariantObject.

    on both the forward and reverse strand.
    @param gc   Genomic coordinates.
    @param ref  Reference allele String.
    @param alt  Alternate allele String.

Member Data Documentation

◆ obj

cls.PharmaADMEntoring.CPharmaADMEntoring.obj = CPharmaADMEntoring(pth);

static

◆ pth

cls.PharmaADMEntoring.CPharmaADMEntoring.pth = CPaths(defDataVer="v-01");