cls.HSGeneOrthologyMapping.CHSGeneOrthologyMappingBase Class Reference

Base class for Homo sapiens to other species gene mappings. More...

Inheritance diagram for cls.HSGeneOrthologyMapping.CHSGeneOrthologyMappingBase:

Collaboration diagram for cls.HSGeneOrthologyMapping.CHSGeneOrthologyMappingBase:

Public Member Functions
def	Convert (s, key, isHS=True)
	Convert from orthologous gene to HS gene. More...
Public Member Functions inherited from cls.PairwiseMapperBase.CEnsemblMapperBase
def	Convert (s, key, srcDbToken, dstDbToken)
	Map from one database to any other. More...
Public Member Functions inherited from cls.PairwiseMapperBase.CPairwiseMapperBase
def	__init__ (s, paths)
	Constructor. More...
def	GetPaths (s)
	Get CPaths object stored here. More...

Detailed Description

Base class for Homo sapiens to other species gene mappings.

Establishes a framework for mapping HS genes to any other species. We have
chosen this way, as we are not sure which additional organisms we want to
see included, therefore this base class has been implemented and
facilitates creation of additional, unforeseen orthology mappings.

Member Function Documentation

Convert()

def cls.HSGeneOrthologyMapping.CHSGeneOrthologyMappingBase.Convert	(		s,
			key,
			isHS = True
	)

Convert from orthologous gene to HS gene.

Parameters

key	Identifier to be converted.
isHS	True if the key is a H. sapiens identifier. The result is then to gene from the orthologous species. If set to False, the conversion is made from the foreign organism to HS.

Returns

A list of COrthlogPair instances. Can be empty.

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The documentation for this class was generated from the following file:

• cls/HSGeneOrthologyMapping.py