cls.HSGeneIdConversion.CHSGeneIdConversion Class Reference

Human gene ID conversion. More...

Inheritance diagram for cls.HSGeneIdConversion.CHSGeneIdConversion:

Collaboration diagram for cls.HSGeneIdConversion.CHSGeneIdConversion:

Static Public Attributes
	paths = CPaths();
	mapper = CHSGeneIdConversion(paths);

Additional Inherited Members
Public Member Functions inherited from cls.PairwiseMapperBase.CEnsemblMapperBase
def	Convert (s, key, srcDbToken, dstDbToken)
	Map from one database to any other. More...
Public Member Functions inherited from cls.PairwiseMapperBase.CPairwiseMapperBase
def	__init__ (s, paths)
	Constructor. More...
def	GetPaths (s)
	Get CPaths object stored here. More...

Detailed Description

Human gene ID conversion.

Conversion of gene identifiers is done using the Ensembl Biomart tool
wherever possible, that is, whenever this tool offers desired
data. Conversion is also always done by converting the foreign id to an
Ensembl gene ID and from there it is further converted to the final ID. By
using this central hub, all possible combinations conversion operations
are carried out easily.

Member Data Documentation

mapper

cls.HSGeneIdConversion.CHSGeneIdConversion.mapper = CHSGeneIdConversion(paths);

static

paths

cls.HSGeneIdConversion.CHSGeneIdConversion.paths = CPaths();

static

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The documentation for this class was generated from the following file:

• cls/HSGeneIdConversion.py