cls.HSEnsgene.CHSEnsgene Class Reference

Small helper class for recording data. More...

Public Member Functions
def	__init__ (s, ensg, chrom, begin, end, strand, band, biotype)
	Ctor. More...
def	__str__ (s)
def	GetBegin (s)
	Gene begin position. More...
def	GetEnd (s)
	Gene end position. More...

Detailed Description

Small helper class for recording data.

Constructor & Destructor Documentation

__init__()

def cls.HSEnsgene.CHSEnsgene.__init__	(		s,
			ensg,
			chrom,
			begin,
			end,
			strand,
			band,
			biotype
	)

Ctor.

    Initializes object. The gene begin and end positions will be converted
    to integers and the strand will be converted to '+' and '-' for
    forward and reverse strand.
    @param ensg  Ensembl ENSG gene identifier.
    @param chrom (@c String) Chromosome name.
    @param begin Gene begin position. Should evaluate to @c int.
    @param end   Gene end position. Should evaluate to @c int.
    @param strand A positive integer for the forward strand, a negative
    for the reverse strand of the gene's position.
    @param band Name of the band.
    @param biotype  Name of Ensembl biotype.

Member Function Documentation

__str__()

def cls.HSEnsgene.CHSEnsgene.__str__

(

s

)

GetBegin()

def cls.HSEnsgene.CHSEnsgene.GetBegin

(

s

)

Gene begin position.

Supplied for R-tree.

GetEnd()

def cls.HSEnsgene.CHSEnsgene.GetEnd

(

s

)

Gene end position.

Supplied for R-tree.

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The documentation for this class was generated from the following file:

• cls/HSEnsgene.py