cls.Background.CBackground Class Reference

Collaboration diagram for cls.Background.CBackground:

Public Member Functions
def	GetBackground (s, ffn)
def	CheckForAnnotation (s, gset, backg, eCell)

Static Public Attributes
string	goaffn = "/home/antonia/Desktop/human-2014-07.gaf.gz";
string	inF = "/home/antonia/Desktop/GSEA/fatigo_example2-uniq-ensg-sp-valid.tsv"
	bp = CAnnotationCorpus("biological_process");
	g = CBackground();
def	gs = g.GetBackground(goaffn);
	tableObj = CDefaultTableReader(inF);
	gset = set([l[2] for l in tableObj]);

Member Function Documentation

CheckForAnnotation()

def cls.Background.CBackground.CheckForAnnotation	(		s,
			gset,
			backg,
			eCell
	)

GetBackground()

def cls.Background.CBackground.GetBackground	(		s,
			ffn
	)

Member Data Documentation

bp

cls.Background.CBackground.bp = CAnnotationCorpus("biological_process");

static

g

cls.Background.CBackground.g = CBackground();

static

goaffn

string cls.Background.CBackground.goaffn = "/home/antonia/Desktop/human-2014-07.gaf.gz";

static

gs

def cls.Background.CBackground.gs = g.GetBackground(goaffn);

static

gset

cls.Background.CBackground.gset = set([l[2] for l in tableObj]);

static

inF

string cls.Background.CBackground.inF = "/home/antonia/Desktop/GSEA/fatigo_example2-uniq-ensg-sp-valid.tsv"

static

tableObj

cls.Background.CBackground.tableObj = CDefaultTableReader(inF);

static

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The documentation for this class was generated from the following file:

• cls/Background.py