FunctionalSimilarity.py File Reference

Classes
class	cls.FunctionalSimilarity.CFunctionalSimilarityBase
	Functional similarity computation base class. More...
class	cls.FunctionalSimilarity.CFunctionalSimilarity
	Functional similarity computation using a database connection. More...

Namespaces
	cls.FunctionalSimilarity
	Similarity of proteins based on semantic similarity.

Variables
string	cls.FunctionalSimilarity.SIM_RESNIK = "resnik";
	Resnik's pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.SIM_LIN = "lin";
	Lin's pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.SIM_IC = "ic";
	Information coefficient pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.SIM_GIC = "gic";
	Graph information content pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.SIM_REL = "rel";
	Schlicker's pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.SIM_JC = "jc";
	Jiang & Conarth's pairwise semantic similarity measure. More...
string	cls.FunctionalSimilarity.IC = "ICo";
	Information Content. More...
list	cls.FunctionalSimilarity.SS_MEASURES = [SIM_RESNIK, SIM_LIN, SIM_IC, SIM_GIC, SIM_REL, SIM_JC];
	List of all possible semantic similarity measures. More...
string	cls.FunctionalSimilarity.FUNSIM_AVG = "avg";
	Average of similarity matrix. More...
string	cls.FunctionalSimilarity.FUNSIM_MAX = "max";
	Max value of similarity matrix. More...
string	cls.FunctionalSimilarity.FUNSIM_RCAVGMAX = "rcavgmax";
	Maximum row/column averaged maxima of similarity matrix. More...
string	cls.FunctionalSimilarity.FUNSIM_BMA = "bma";
	Best match average of similarity matrix. More...
string	cls.FunctionalSimilarity.FUNSIM_BMA2 = "bma2";
	Best match average averaged of similarity matrix. More...