utest.tVariant.CTestVariant Class Reference

Unit test for variant functionality. More...

Inheritance diagram for utest.tVariant.CTestVariant:

Collaboration diagram for utest.tVariant.CTestVariant:

Public Member Functions
def	setUpClass (cls)
def	SetDataVersion (cls)
	Set another data version. More...
def	test_010_allele_snv (s)
def	test_020_allele_many_snv (s)
def	test_030_allele_snv_nobuild (s)
def	test_040_allele_snv_defaultbuild (s)
def	test_050_allele_snv_wrongbuild (s)
def	test_060_allele_snv_wrongchrom (s)
def	test_070_allele_snv_wrongstart (s)
def	test_080_allele_snv_wrongref (s)
def	test_090_allele_snv_wrongalt (s)
def	test_100_allele_mnv_norml (s)
def	test_100_allele_mnv_normllong (s)
def	test_110_allele_mnv_normr (s)
def	test_120_allele_mnv_normrlong (s)
def	test_130_allele_mnv_normlr (s)
def	test_200_allele_ins (s)
def	test_210_allele_ins_beg_end (s)
def	test_220_allele_ins_hyphen (s)
def	test_230_allele_ins_wrong (s)
def	test_300_allele_del (s)
def	test_310_allele_del_2 (s)
def	test_320_allele_del_many (s)
def	test_330_allele_del_hyphen (s)
def	test_400_coord_simple (s)
def	test_410_coord_simple2 (s)
def	test_420_coord_range (s)
def	test_430_cmp_coord_allele_simple (s)
def	test_440_cmp_coord_allele_simple_wrong (s)
def	test_450_cmp_coord_allele_range (s)
Public Member Functions inherited from utest.CompatibilityLayer.CCompatibilityLayerTestCase
def	assertItemsEqual (s, x, y)
	Re-implementation of a function missing in Python 3. More...

Public Attributes
	Pth
	DVer

Detailed Description

Unit test for variant functionality.

This test aims to check the functionality of CCoordinateVariant and
CAlleleVariant.

Member Function Documentation

SetDataVersion()

def utest.tVariant.CTestVariant.SetDataVersion

(

cls

)

Set another data version.

    For more details, see CTestHSGeneIdConversion.
    @param cls  This class.

setUpClass()

def utest.tVariant.CTestVariant.setUpClass

(

cls

)

test_010_allele_snv()

def utest.tVariant.CTestVariant.test_010_allele_snv

(

s

)

test_020_allele_many_snv()

def utest.tVariant.CTestVariant.test_020_allele_many_snv

(

s

)

test_030_allele_snv_nobuild()

def utest.tVariant.CTestVariant.test_030_allele_snv_nobuild

(

s

)

test_040_allele_snv_defaultbuild()

def utest.tVariant.CTestVariant.test_040_allele_snv_defaultbuild

(

s

)

test_050_allele_snv_wrongbuild()

def utest.tVariant.CTestVariant.test_050_allele_snv_wrongbuild

(

s

)

test_060_allele_snv_wrongchrom()

def utest.tVariant.CTestVariant.test_060_allele_snv_wrongchrom

(

s

)

test_070_allele_snv_wrongstart()

def utest.tVariant.CTestVariant.test_070_allele_snv_wrongstart

(

s

)

test_080_allele_snv_wrongref()

def utest.tVariant.CTestVariant.test_080_allele_snv_wrongref

(

s

)

test_090_allele_snv_wrongalt()

def utest.tVariant.CTestVariant.test_090_allele_snv_wrongalt

(

s

)

test_100_allele_mnv_norml()

def utest.tVariant.CTestVariant.test_100_allele_mnv_norml

(

s

)

test_100_allele_mnv_normllong()

def utest.tVariant.CTestVariant.test_100_allele_mnv_normllong

(

s

)

test_110_allele_mnv_normr()

def utest.tVariant.CTestVariant.test_110_allele_mnv_normr

(

s

)

test_120_allele_mnv_normrlong()

def utest.tVariant.CTestVariant.test_120_allele_mnv_normrlong

(

s

)

test_130_allele_mnv_normlr()

def utest.tVariant.CTestVariant.test_130_allele_mnv_normlr

(

s

)

test_200_allele_ins()

def utest.tVariant.CTestVariant.test_200_allele_ins

(

s

)

test_210_allele_ins_beg_end()

def utest.tVariant.CTestVariant.test_210_allele_ins_beg_end

(

s

)

test_220_allele_ins_hyphen()

def utest.tVariant.CTestVariant.test_220_allele_ins_hyphen

(

s

)

test_230_allele_ins_wrong()

def utest.tVariant.CTestVariant.test_230_allele_ins_wrong

(

s

)

test_300_allele_del()

def utest.tVariant.CTestVariant.test_300_allele_del

(

s

)

test_310_allele_del_2()

def utest.tVariant.CTestVariant.test_310_allele_del_2

(

s

)

test_320_allele_del_many()

def utest.tVariant.CTestVariant.test_320_allele_del_many

(

s

)

test_330_allele_del_hyphen()

def utest.tVariant.CTestVariant.test_330_allele_del_hyphen

(

s

)

test_400_coord_simple()

def utest.tVariant.CTestVariant.test_400_coord_simple

(

s

)

test_410_coord_simple2()

def utest.tVariant.CTestVariant.test_410_coord_simple2

(

s

)

test_420_coord_range()

def utest.tVariant.CTestVariant.test_420_coord_range

(

s

)

test_430_cmp_coord_allele_simple()

def utest.tVariant.CTestVariant.test_430_cmp_coord_allele_simple

(

s

)

test_440_cmp_coord_allele_simple_wrong()

def utest.tVariant.CTestVariant.test_440_cmp_coord_allele_simple_wrong

(

s

)

test_450_cmp_coord_allele_range()

def utest.tVariant.CTestVariant.test_450_cmp_coord_allele_range

(

s

)

Member Data Documentation

DVer

utest.tVariant.CTestVariant.DVer

Pth

utest.tVariant.CTestVariant.Pth

---

The documentation for this class was generated from the following file:

• utest/tVariant.py