__init__(s, vcfReader, pedReader, pen, det, mode, minCov, missing, perm) | cls.MendelianFiltering.CMendelianFiltering | |
DoMendelianFiltrationAll(s, allModes) | cls.MendelianFiltering.CMendelianFiltering | |
DoMendelianFiltrationAny(s, allModes) | cls.MendelianFiltering.CMendelianFiltering | |
DoMendelianFiltrationOne(s) | cls.MendelianFiltering.CMendelianFiltering | |
FormatIndx2ArrayIndx | cls.MendelianFiltering.CMendelianFiltering | static |
GenotypesPerMode | cls.MendelianFiltering.CMendelianFiltering | static |
GetGenotypes(s, variantLine) | cls.MendelianFiltering.CMendelianFiltering | |
GetIntersectInds(s, list1, list2) | cls.MendelianFiltering.CMendelianFiltering | |
GetListEntries(s, theList, positions) | cls.MendelianFiltering.CMendelianFiltering | |
InGenotypeGroup(s, g1, g2, mode) | cls.MendelianFiltering.CMendelianFiltering | |
InRegion(s, pos, mode) | cls.MendelianFiltering.CMendelianFiltering | |
IsRetained(s, pos, genotypes, alleles, mode) | cls.MendelianFiltering.CMendelianFiltering | |
ParsePedfile(s, pedReader, vcfReader) | cls.MendelianFiltering.CMendelianFiltering | |
Phenotype | cls.MendelianFiltering.CMendelianFiltering | static |
RegionsPerMode | cls.MendelianFiltering.CMendelianFiltering | static |