ReactomeBiopaxParser.py File Reference

Classes
class	cls.ReactomeBiopaxParser.CReactomeBiopaxParser

Namespaces
	cls.ReactomeBiopaxParser
	Parses a Biopax level 3 file to provide its content to an accessor class.

Variables
string	cls.ReactomeBiopaxParser.ID_REACTOME = "Reactome"
string	cls.ReactomeBiopaxParser.ID_UNIPROT = "UniProt"
string	cls.ReactomeBiopaxParser.ID_ENSEMBL = "ENSEMBL"
string	cls.ReactomeBiopaxParser.ID_UNIPROT_ISO = "UniProt Isoform"
string	cls.ReactomeBiopaxParser.ID_CHEBI = "ChEBI"
string	cls.ReactomeBiopaxParser.ID_MIRBASE = "miRBase"
string	cls.ReactomeBiopaxParser.ID_EMBL = "EMBL"
list	cls.ReactomeBiopaxParser.SUPPORTED_IDS
dictionary	cls.ReactomeBiopaxParser.X_NS
dictionary	cls.ReactomeBiopaxParser.NS_MAP
string	cls.ReactomeBiopaxParser.X_RDF = "{http://www.w3.org/1999/02/22-rdf-syntax-ns#}"
string	cls.ReactomeBiopaxParser.X_ID = X_RDF + "ID"
string	cls.ReactomeBiopaxParser.X_ID2 = X_RDF + "about"
string	cls.ReactomeBiopaxParser.X_RES = X_RDF + "resource"
dictionary	cls.ReactomeBiopaxParser.ENTRIES
list	cls.ReactomeBiopaxParser.PARSE_CATEGORIES = [x for x in ENTRIES]
list	cls.ReactomeBiopaxParser.QUERY_CATEGORIES
list	cls.ReactomeBiopaxParser.ID_CATEGORIES = [x for x in ENTRIES if "followForXref" in ENTRIES[x] ]