MITABAccess.py File Reference

Classes
class	cls.MITABAccess.CMitabParserParams
class	cls.MITABAccess.CMITABAccess
	Parses and stores the content of a MITAB file for later querying. More...

Namespaces
	cls.MITABAccess
	Class for accessing the interaction data from MITAB files.

Variables
list	cls.MITABAccess.MITAB_COLS
string	cls.MITABAccess.MITAB_EMPTY = "-"
string	cls.MITABAccess.MITAB_DELIM = "|"
string	cls.MITABAccess.MITAB_DELIM_2 = ":"
string	cls.MITABAccess.TOKEN_MICV_GENE_ID = "entrezgene/locuslink"
string	cls.MITABAccess.TOKEN_MICV_UNIPROT = "uniprotkb"
string	cls.MITABAccess.TOKEN_MICV_REFSEQ = "refseq"
string	cls.MITABAccess.TOKEN_IN_GENE_ID = "entrez"
string	cls.MITABAccess.TOKEN_IN_UNIPROT = "uniprot"
string	cls.MITABAccess.TOKEN_IREF_COMPLEX = "complex"
string	cls.MITABAccess.TOKEN_PPI = "ppi"
string	cls.MITABAccess.TOKEN_SELF = "self"
string	cls.MITABAccess.TOKEN_COMPLEX = "complex"
string	cls.MITABAccess.TOKEN_ROGID = "rogid"
string	cls.MITABAccess.TOKEN_IREFINDEX = "irefindex"
list	cls.MITABAccess.SUPPORTED_INPUTS = [TOKEN_IN_UNIPROT, TOKEN_IN_GENE_ID]
list	cls.MITABAccess.SUPPORTED_INTERACTION_TYPES = [TOKEN_PPI, TOKEN_SELF, TOKEN_COMPLEX]
list	cls.MITABAccess.EMPTY_CELL = ["-", "", "--"]
dictionary	cls.MITABAccess.MI_CV_PREDICTION
list	cls.MITABAccess.DEFAULT_DATA_TYPE = [TOKEN_PPI]
bool	cls.MITABAccess.DEFAULT_INCLUDE_PREDICTIONS = False
bool	cls.MITABAccess.DEFAULT_INCLUDE_NON_HUMAN = False
bool	cls.MITABAccess.DEFAULT_MAP_IDENTIFIERS = False
int	cls.MITABAccess.DEFAULT_MAX_COMPLEX_LENGTH = 1000