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| int | common.Globals.PY_VER = 10*sys.version_info[0] + sys.version_info[1]; |
| | This interpreter's version as a two digit number, major and minor release. More...
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| |
| string | common.Globals.CSV_SEP = "\t"; |
| | Default separator for tabular-like (ie. More...
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| |
| string | common.Globals.CELL_NO_DATA = "--"; |
| | Indicator for empty cell when writing out tables. More...
|
| |
| string | common.Globals.VCF_NO_DATA = "." |
| | Default empty cell value of the VCF format, as defined by the 1000 Genomes project. More...
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| |
| string | common.Globals.GATK_NO_DATA = "./." |
| | Empty cell value put by the GATK tools. More...
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| |
| string | common.Globals.DEFAULT_DATA_VERSION = "v-00"; |
| | Default section name, also used for requesting default path configuration. More...
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| |
| string | common.Globals.ENSEMBL_HSGENE_DB = "hsgene-0"; |
| | Ensembl protein database, used by multiple conversion modules. More...
|
| |
| | common.Globals.DI_ROOT = os.path.normpath(os.path.join(_dirNm, "..", "..", "..")); |
| | Top level directory for the D-integrator project. More...
|
| |
| | common.Globals.DI_PY_ROOT = os.path.normpath(os.path.join(DI_ROOT, "src", "python")); |
| | Directory for python sources. More...
|
| |
| | common.Globals.idx = sys.argv.index("--config") |
| |
| string | common.Globals.errMsg = "Cannot open configuration file ``{0}''.\n".format(_configFN); |
| |
| | common.Globals.DI_VERSION = _Config.get("DEFAULT", "di.version"); |
| | The Data Integrator software and data version, an overall tag. More...
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| |
| string | common.Globals.CFG_HS_GENOME_BUILD_VERSION = "ensembl.hs.genome.build.version"; |
| | Current Ensembl genome build version token for config file. More...
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| |
| string | common.Globals.TAXID_HUMAN = "9606" |
| |
| tuple | common.Globals.GO_NAMESPACES |
| | Gene ontology namespace abbreviations, their long names, and as they appear in GO annotation corpora. More...
|
| |
| int | common.Globals.GO_MF_IDX = 0; |
| | Index into GO_NAMESPACES for molecular function. More...
|
| |
| int | common.Globals.GO_BP_IDX = 1; |
| | Index into GO_NAMESPACES for biological process. More...
|
| |
| int | common.Globals.GO_CC_IDX = 2; |
| | Index into GO_NAMESPACES for cellular component. More...
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| |
| int | common.Globals.GO_NS2L_IDX = 0; |
| | Gene ontology two letter abbreviation index into GO_NAMESPACES. More...
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| |
| int | common.Globals.GO_NSFULL_IDX = 1; |
| | Gene ontology full namespace text index into GO_NAMESPACES. More...
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| |
| int | common.Globals.GO_NS1L_IDX = 2; |
| | Gene ontology one letter abbreviation index into GO_NAMESPACES. More...
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| |
| string | common.Globals.OP_AND = "AND" |
| |
| string | common.Globals.OP_OR = "OR" |
| |
