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Galaxy
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Tools
Data import
Get Data
Upload File
from your computer
Data manipulation
Text Manipulation
Add column
to an existing dataset
Concatenate datasets
tail-to-head
Cut
columns from a table
Merge Columns
together
Convert
delimiters to TAB
Create single interval
as a new dataset
Change Case
of selected columns
Paste
two files side by side
Remove beginning
of a file
Select random lines
from a file
Select first
lines from a dataset
Select last
lines from a dataset
Trim
leading or trailing characters
Line/Word/Character count
of a dataset
Secure Hash / Message Digest
on a dataset
Filter and Sort
Filter
data on any column using simple expressions
Sort
data in ascending or descending order
Select
lines that match an expression
Subtract and Group
Compare two Datasets
to find common or distinct rows
Group
data by a column and perform aggregate operation on other columns.
Plotting and Stats
Plotting tool
for multiple series and graph types
Summary Statistics
for any numerical column
Data integration
CBM/Dintor
Basic functionality
DMGeneIdConverter
D. melanogaster gene ID conversion
gcoords2cons
Genomic Coordinates to Consequence types
Gcoords2gcoords
Generation and split of genomic coordinates
gcoords2genes
Genomic Coordinates to neighbouring Genes
gcoords2reg
Retrieval of Ensembl regulatory information
gcoords2snp
Genomic Coordinates to SNP
gcoordsconservation
Sequence conservation status/GERP scores retriever
gene2canonexons
Extract exon coordinates of a Gene
liftgcoords
Lifts Genomic Coordinates from any build to the most recent
snp2gcoords
SNP to Genomic Coordinates
tbl2tbl
Convert among table formats
tblsubmerge
Denormalize table
tblsubsplit
Normalize table
HSEnsgProteinMapper
Maps between a variety of protein IDs for H.sapiens
HSGeneIdConverter
H.sapiens gene ID conversion
HSGeneOrthologyMapper
Orthology mapping for H.sapiens
Interval2Genes
Finds all genes contained in an interval.
Pos2LDBlock
Map a position in the genome to the LD block.
SNPGeneGlobalLDChecker
Linkage disequilibrium in SNP/gene pairs
TableJoiner
Join two unsorted tables
VCF2Dint
Conversion from VCF to Dintegrator input format
Annotation retrieval
ClinVarAnnotator
Flags variants found in the ClinVar database
DrugBankAnnotator
Retrieve information from DrugBank
GOAnnotator
Accesses information from the Gene Ontology
HSGeneAtlas
GNF Gene Atlas gene expression data supplementing for H.sapiens
InteractionAnnotator
Find interacting proteins with iRefIndex
PharmaADMEntor
Flag variants found in the PharmaADME database
ReactomeAnnotator
Accesses information from Reactome
Computational methods
GOEnricher
Compute Gene Set Enrichment Analysis
GOFunSim
Compute similarity between pairs of proteins
MendelianFilter
Filter variants that do not comply with Mendelian inheritence
MetaRanker
Computes MetaRanker scores from multiple columns
Prioritizer
Combine various Dintegrator modules to perform integrative gene prioritization.
gcoords2ld
Pairwise coordinate/gene LD checker
HSEnsg2gcoords
Assign gene borders for Ensembl gene IDs.
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